Layer 2/3 Burst Non-accommodating Martinotti Cell (3)

Model Type:
Cell
Neurolex IDs: Neocortex Layer 2
Neocortex Layer 3
Martinotti Cell
Keywords: burst non-accommodating,Layer 2, Layer 3, Layer 2/3,GABAergic, inhibitory, neocortex, rat, somatosensory cortex, Martinotti
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000314
bNAC219_L23_MC_55e4a7c88f_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000314
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Regular Spikers (RS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -70.63 mV
Rheobase Current Interval (0.03662, 0.03754] nA
Threshold Current Interval (0.17578, 0.23438] nA
Bias Current (to -80.00 mV) -0.0204 nA
Testing Temperature 34.0 °C
Stability Interval [-1.875, 15.0] nA
AP 1-2 Amplitude Drop 0.3115 mV
AP 1 Steady State Amplitude Change 4.3236 mV
AP 1 Amplitude 63.0906 mV
AP 1 Width at Half Height 0.6900 ms
AP 1 Width (Peak To Trough) 3.5600 ms
AP 1 Rate of Change Peak to Trough -21.8605 mV/ms
AP 1 AHP Depth 14.7327 mV
AP2 Amplitude 62.7791 mV
AP2 Width at Half Height 0.6900 ms
AP 2 Width (Peak to Trough) 3.6000 ms
AP 2 Rate of Change Peak to Trough -21.5729 mV/ms
AP 2 AHP Depth 14.8833 mV
AP 1-2 Amplitude Change Percent -0.4938 %
AP 1-2 Half Width Change Percent 0.0000 %
AP 1-2 Rate of Change Peak to Trough Percent Change -1.3156 %
AP 1-2 AHP Depth Percent Change 1.0222 %
Input Resistance 460.6275 MΩ
AP 1 Delay Mean 24.0100 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 55.8000 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 33.5050 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -42.8571 %
Steady State Accommodation Mean -42.8571 %
Accommodation Rate to Steady State -0.1489 %/ms
Accommodation at Steady State Mean -76.3190 %
Accommodation Rate Mean at Steady State 142.8641 ms
ISI CV 4.0830
ISI Median 95.0100 ms
ISI Burst Mean Change 10.7896 %
Spike Rate (Strong Stimulation) 37.0000 Hz
AP 1 Delay Mean (Strong Stimulation) 8.4600 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 23.3300 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 15.3700 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2051.3900 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 7502.02 µm2
Number of Stems 4.0
Number of Bifurcations 24.0
Number of Branches 51.0
Overall Width 248.624 µm
Overall Height 484.599 µm
Overall Depth 137.6 µm
Average Diameter 1.14531 µm
Total Length 2102.5 µm
Total Surface 6670.67 µm2
Total Volume 3822.19 µm3
Max Euclidean Distance 351.714 µm
Max Path Distance 398.308 µm
Max Branch Order 7.0
Average Contraction 0.950087
Total Fragmentation 597.0
Partition Asymmetry 0.536806
Average Rall's Ratio 0.824333
Average Bifurcation Angle Local 60.1231 °
Average Bifurcation Angle Remote 80.1041 °
Fractal Dimension 1.00697
Complexity Summary
State Equations 1081
Optimal Time-Step 0.00765 ms
Relative Complexity 259.61 HH
Model Size
Sections 52
Compartments 106
State Equations 1081
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00765 ms
Optimal Time-Step Error 0.29 %
Optimal Time-Step Benchmark Run Time 259.61 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 1.56 %
Max. Stable Time-Step Benchmark Run Time 496.02 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 13063 Hz
CVODE Steps Per AP 373
CVODE Benchmark Run Time 219.21 HH
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