Layer 1 Burst Non-accommodating Small Axon Cell (5)

Model Type:
Cell
Neurolex IDs: Neocortex Layer 1
Keywords: burst non-accommodating,Layer 1,Rat, somatosensory cortex, neocortex, small axon
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000291
bNAC219_L1_SLAC_d22d584760_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000291
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Regular Spikers (RS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -72.07 mV
Rheobase Current Interval (0.02129, 0.02197] nA
Threshold Current Interval (0.11719, 0.17578] nA
Bias Current (to -80.00 mV) -0.0114 nA
Testing Temperature 34.0 °C
Stability Interval [-1.25, 15.0] nA
AP 1-2 Amplitude Drop 0.4783 mV
AP 1 Steady State Amplitude Change 1.9256 mV
AP 1 Amplitude 74.4692 mV
AP 1 Width at Half Height 0.5000 ms
AP 1 Width (Peak To Trough) 2.9600 ms
AP 1 Rate of Change Peak to Trough -35.1696 mV/ms
AP 1 AHP Depth 29.6329 mV
AP2 Amplitude 73.9909 mV
AP2 Width at Half Height 0.4900 ms
AP 2 Width (Peak to Trough) 2.9600 ms
AP 2 Rate of Change Peak to Trough -35.0818 mV/ms
AP 2 AHP Depth 29.8514 mV
AP 1-2 Amplitude Change Percent -0.6423 %
AP 1-2 Half Width Change Percent -2.0000 %
AP 1-2 Rate of Change Peak to Trough Percent Change -0.2496 %
AP 1-2 AHP Depth Percent Change 0.7372 %
Input Resistance 711.8229 MΩ
AP 1 Delay Mean 24.7300 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 62.3900 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 46.3100 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -50.0000 %
Steady State Accommodation Mean -50.0000 %
Accommodation Rate to Steady State -0.1862 %/ms
Accommodation at Steady State Mean -82.7041 %
Accommodation Rate Mean at Steady State 119.7870 ms
ISI CV 3.4827
ISI Median 156.8900 ms
ISI Burst Mean Change 45.9373 %
Spike Rate (Strong Stimulation) 13.0000 Hz
AP 1 Delay Mean (Strong Stimulation) 9.0200 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 26.5900 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 18.7750 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2057.0900 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 5743.64 µm2
Number of Stems 6.0
Number of Bifurcations 15.0
Number of Branches 35.0
Overall Width 141.414 µm
Overall Height 170.327 µm
Overall Depth 76.19 µm
Average Diameter 1.14138 µm
Total Length 1116.36 µm
Total Surface 3562.46 µm2
Total Volume 2246.09 µm3
Max Euclidean Distance 161.596 µm
Max Path Distance 194.532 µm
Max Branch Order 4.0
Average Contraction 0.941445
Total Fragmentation 497.0
Partition Asymmetry 0.444444
Average Rall's Ratio 1.675
Average Bifurcation Angle Local 60.6627 °
Average Bifurcation Angle Remote 64.3302 °
Fractal Dimension 1.01646
Complexity Summary
State Equations 661
Optimal Time-Step 0.00787 ms
Relative Complexity 141.27 HH
Model Size
Sections 36
Compartments 64
State Equations 661
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00787 ms
Optimal Time-Step Error 0.38 %
Optimal Time-Step Benchmark Run Time 141.27 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 1.44 %
Max. Stable Time-Step Benchmark Run Time 277.86 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 15182 Hz
CVODE Steps Per AP 444
CVODE Benchmark Run Time 143.42 HH
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