Layer 1 Burst Non-accommodating Neurogliaform Cell with dense axonal arborization (3)

Model Type:
Cell
Neurolex IDs: Neocortex Layer 1
Keywords: burst non-accommodating,Layer 1,GABAergic, inhibitory, neocortex, rat, somatosensory cortex, neocortex, neurogliaform, dense axonal arborization
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000284
bNAC219_L1_NGCDA_46b45974f4_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000284
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Regular Spikers (RS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -71.28 mV
Rheobase Current Interval (0.03387, 0.03479] nA
Threshold Current Interval (0.17578, 0.23438] nA
Bias Current (to -80.00 mV) -0.0152 nA
Testing Temperature 34.0 °C
Stability Interval [-1.5625, 15.0] nA
AP 1-2 Amplitude Drop 0.2021 mV
AP 1 Steady State Amplitude Change 4.2108 mV
AP 1 Amplitude 61.2372 mV
AP 1 Width at Half Height 0.7700 ms
AP 1 Width (Peak To Trough) 4.2200 ms
AP 1 Rate of Change Peak to Trough -19.0795 mV/ms
AP 1 AHP Depth 19.2784 mV
AP2 Amplitude 61.0351 mV
AP2 Width at Half Height 0.7800 ms
AP 2 Width (Peak to Trough) 4.2600 ms
AP 2 Rate of Change Peak to Trough -18.8612 mV/ms
AP 2 AHP Depth 19.3137 mV
AP 1-2 Amplitude Change Percent -0.3300 %
AP 1-2 Half Width Change Percent 1.2987 %
AP 1-2 Rate of Change Peak to Trough Percent Change -1.1441 %
AP 1-2 AHP Depth Percent Change 0.1834 %
Input Resistance 582.3514 MΩ
AP 1 Delay Mean 20.4400 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 51.5600 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 33.5600 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -33.3333 %
Steady State Accommodation Mean -33.3333 %
Accommodation Rate to Steady State -0.1330 %/ms
Accommodation at Steady State Mean -80.4649 %
Accommodation Rate Mean at Steady State 114.6745 ms
ISI CV 3.9716
ISI Median 107.0850 ms
ISI Burst Mean Change 15.6812 %
Spike Rate (Strong Stimulation) 38.0000 Hz
AP 1 Delay Mean (Strong Stimulation) 7.5900 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 23.0800 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 16.0200 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2047.3600 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 7766.08 µm2
Number of Stems 8.0
Number of Bifurcations 21.0
Number of Branches 49.0
Overall Width 142.732 µm
Overall Height 181.565 µm
Overall Depth 91.33 µm
Average Diameter 0.975905 µm
Total Length 1876.51 µm
Total Surface 5254.23 µm2
Total Volume 3162.93 µm3
Max Euclidean Distance 145.127 µm
Max Path Distance 186.524 µm
Max Branch Order 5.0
Average Contraction 0.946021
Total Fragmentation 1052.0
Partition Asymmetry 0.48254
Average Rall's Ratio 1.65462
Average Bifurcation Angle Local 65.9188 °
Average Bifurcation Angle Remote 73.4454 °
Fractal Dimension 1.00981
Complexity Summary
State Equations 1001
Optimal Time-Step 0.00771 ms
Relative Complexity 221.11 HH
Model Size
Sections 50
Compartments 98
State Equations 1001
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00771 ms
Optimal Time-Step Error 0.29 %
Optimal Time-Step Benchmark Run Time 221.11 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 1.35 %
Max. Stable Time-Step Benchmark Run Time 425.86 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 13030 Hz
CVODE Steps Per AP 420
CVODE Benchmark Run Time 193.00 HH
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