Layer 4 Burst Irregular Bipolar Cell (2)

Model Type:
Cell
Neurolex IDs: Bipolar Cell
Neocortex Layer 4
Keywords: burst irregular,Layer 4,GABAergic, inhibitory, neocortex, rat, somatosensory cortex, bipolar
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000213
bIR215_L4_BP_7d938499d8_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCH000115
StochKv_deterministic.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000213
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Bursters (B)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -75.42 mV
Rheobase Current Interval (0.03525, 0.03548] nA
Threshold Current Interval (0.00000, 0.05676] nA
Bias Current (to -70.00 mV) 0.0089 nA
Testing Temperature 34.0 °C
Stability Interval [0.0, 14.53125] nA
AP 1-2 Amplitude Drop 5.3446 mV
AP 1 Steady State Amplitude Change 4.6923 mV
AP 1 Amplitude 93.1746 mV
AP 1 Width at Half Height 0.4000 ms
AP 1 Width (Peak To Trough) 1.7200 ms
AP 1 Rate of Change Peak to Trough -69.0032 mV/ms
AP 1 AHP Depth 25.5109 mV
AP2 Amplitude 87.8300 mV
AP2 Width at Half Height 0.3800 ms
AP 2 Width (Peak to Trough) 1.6800 ms
AP 2 Rate of Change Peak to Trough -67.4936 mV/ms
AP 2 AHP Depth 25.5593 mV
AP 1-2 Amplitude Change Percent -5.7361 %
AP 1-2 Half Width Change Percent -5.0000 %
AP 1-2 Rate of Change Peak to Trough Percent Change -2.1877 %
AP 1-2 AHP Depth Percent Change 0.1898 %
Input Resistance 913.9889 MΩ
AP 1 Delay Mean 3.5500 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 43.8300 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 87.4450 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -50.0000 %
Steady State Accommodation Mean -75.0000 %
Accommodation Rate to Steady State N/A %/ms
Accommodation at Steady State Mean -81.2535 %
Accommodation Rate Mean at Steady State 132.2073 ms
ISI CV 3.5403
ISI Median 201.0900 ms
ISI Burst Mean Change 234.1857 %
Spike Rate (Strong Stimulation) 12.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 1.5300 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 20.4500 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 20.0450 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2207.8400 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 2094.2 µm2
Number of Stems 2.0
Number of Bifurcations 7.0
Number of Branches 15.0
Overall Width 56.043 µm
Overall Height 943.249 µm
Overall Depth 25.95 µm
Average Diameter 1.07428 µm
Total Length 1300.17 µm
Total Surface 2685.88 µm2
Total Volume 917.263 µm3
Max Euclidean Distance 972.801 µm
Max Path Distance 991.737 µm
Max Branch Order 6.0
Average Contraction 0.990941
Total Fragmentation 256.0
Partition Asymmetry 0.857143
Average Rall's Ratio 1.51667
Average Bifurcation Angle Local 47.5164 °
Average Bifurcation Angle Remote 44.5837 °
Fractal Dimension 1.00175
Complexity Summary
State Equations 745
Optimal Time-Step 0.00785 ms
Relative Complexity 179.46 HH
Model Size
Sections 16
Compartments 66
State Equations 745
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00785 ms
Optimal Time-Step Error 0.28 %
Optimal Time-Step Benchmark Run Time 179.46 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 1.27 %
Max. Stable Time-Step Benchmark Run Time 352.20 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 17428 Hz
CVODE Steps Per AP 526
CVODE Benchmark Run Time 210.22 HH
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