Layer 5 Burst Accommodating Martinotti Cell (3)

Model Type:
Cell
Neurolex IDs: Martinotti Cell
Neocortex Layer 5
Keywords: burst accommodating,Layer 5,GABAergic, inhibitory, neocortex, rat, somatosensory cortex, Martinotti
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000159
bAC217_L5_MC_bf2b2fbcbf_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000159
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Bursters (B)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -68.64 mV
Rheobase Current Interval (0.05493, 0.05585] nA
Threshold Current Interval (0.17578, 0.23438] nA
Bias Current (to -80.00 mV) -0.0519 nA
Testing Temperature 34.0 °C
Stability Interval [-1.875, 15.0] nA
AP 1-2 Amplitude Drop 0.3755 mV
AP 1 Steady State Amplitude Change 0.7633 mV
AP 1 Amplitude 74.9472 mV
AP 1 Width at Half Height 0.4900 ms
AP 1 Width (Peak To Trough) 2.3700 ms
AP 1 Rate of Change Peak to Trough -39.6898 mV/ms
AP 1 AHP Depth 19.1175 mV
AP2 Amplitude 74.5717 mV
AP2 Width at Half Height 0.4900 ms
AP 2 Width (Peak to Trough) 2.3800 ms
AP 2 Rate of Change Peak to Trough -39.2806 mV/ms
AP 2 AHP Depth 18.9160 mV
AP 1-2 Amplitude Change Percent -0.5010 %
AP 1-2 Half Width Change Percent 0.0000 %
AP 1-2 Rate of Change Peak to Trough Percent Change -1.0310 %
AP 1-2 AHP Depth Percent Change -1.0540 %
Input Resistance 225.9698 MΩ
AP 1 Delay Mean 27.3800 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 88.1100 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 67.5650 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -50.0000 %
Steady State Accommodation Mean -50.0000 %
Accommodation Rate to Steady State -0.0745 %/ms
Accommodation at Steady State Mean -76.9221 %
Accommodation Rate Mean at Steady State 247.5896 ms
ISI CV 3.1384
ISI Median 200.7000 ms
ISI Burst Mean Change 22.5095 %
Spike Rate (Strong Stimulation) 11.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 6.1700 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 33.4000 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 28.5300 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2073.9900 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 6045.57 µm2
Number of Stems 4.0
Number of Bifurcations 78.0
Number of Branches 159.0
Overall Width 364.656 µm
Overall Height 872.214 µm
Overall Depth 221.5 µm
Average Diameter 0.738131 µm
Total Length 6823.54 µm
Total Surface 15206.4 µm2
Total Volume 5426.1 µm3
Max Euclidean Distance 521.589 µm
Max Path Distance 600.306 µm
Max Branch Order 11.0
Average Contraction 0.937276
Total Fragmentation 8365.0
Partition Asymmetry 0.588923
Average Rall's Ratio 0.839914
Average Bifurcation Angle Local 27.5578 °
Average Bifurcation Angle Remote 72.0762 °
Fractal Dimension 1.01445
Complexity Summary
State Equations 3731
Optimal Time-Step 0.00769 ms
Relative Complexity 968.52 HH
Model Size
Sections 159
Compartments 371
State Equations 3731
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00769 ms
Optimal Time-Step Error 0.12 %
Optimal Time-Step Benchmark Run Time 968.52 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 1.07 %
Max. Stable Time-Step Benchmark Run Time 1860.94 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 12978 Hz
CVODE Steps Per AP 634
CVODE Benchmark Run Time 945.79 HH
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