Layer 5 Burst Accommodating Large Basket Cell (4)

Model Type:
Cell
Neurolex IDs: Neocortex basket cell
Neocortex Layer 5
Keywords: burst accommodating,Layer 5,Fast-spiking, interneuron, GABAergic, inhibitory, neocortex, rat, somatosensory cortex, large, basket
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000155
bAC217_L5_LBC_b66dd6b653_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000155
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Bursters (B)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -72.58 mV
Rheobase Current Interval (0.11810, 0.11948] nA
Threshold Current Interval (0.29297, 0.35156] nA
Bias Current (to -80.00 mV) -0.0306 nA
Testing Temperature 34.0 °C
Stability Interval [-2.1875, 15.0] nA
AP 1-2 Amplitude Drop 3.6102 mV
AP 1 Steady State Amplitude Change 4.5963 mV
AP 1 Amplitude 79.0538 mV
AP 1 Width at Half Height 0.4400 ms
AP 1 Width (Peak To Trough) 2.3500 ms
AP 1 Rate of Change Peak to Trough -43.6238 mV/ms
AP 1 AHP Depth 23.4621 mV
AP2 Amplitude 75.4437 mV
AP2 Width at Half Height 0.4600 ms
AP 2 Width (Peak to Trough) 2.3900 ms
AP 2 Rate of Change Peak to Trough -41.4119 mV/ms
AP 2 AHP Depth 23.5307 mV
AP 1-2 Amplitude Change Percent -4.5667 %
AP 1-2 Half Width Change Percent 4.5455 %
AP 1-2 Rate of Change Peak to Trough Percent Change -5.0706 %
AP 1-2 AHP Depth Percent Change 0.2921 %
Input Resistance 229.2124 MΩ
AP 1 Delay Mean 9.7400 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 48.6700 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 45.9350 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -25.0000 %
Steady State Accommodation Mean -50.0000 %
Accommodation Rate to Steady State -0.1097 %/ms
Accommodation at Steady State Mean -85.8186 %
Accommodation Rate Mean at Steady State 134.2014 ms
ISI CV 3.1370
ISI Median 180.1400 ms
ISI Burst Mean Change 35.9877 %
Spike Rate (Strong Stimulation) 12.0000 Hz
AP 1 Delay Mean (Strong Stimulation) 3.2800 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 24.1400 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 22.0550 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2038.6500 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 16518.1 µm2
Number of Stems 7.0
Number of Bifurcations 30.0
Number of Branches 66.0
Overall Width 556.22 µm
Overall Height 670.311 µm
Overall Depth 407.76 µm
Average Diameter 0.533348 µm
Total Length 7520.68 µm
Total Surface 11819.6 µm2
Total Volume 7510.41 µm3
Max Euclidean Distance 604.753 µm
Max Path Distance 687.297 µm
Max Branch Order 6.0
Average Contraction 0.950716
Total Fragmentation 5084.0
Partition Asymmetry 0.315397
Average Rall's Ratio 0.80125
Average Bifurcation Angle Local 18.3209 °
Average Bifurcation Angle Remote 44.2876 °
Fractal Dimension 1.00973
Complexity Summary
State Equations 3831
Optimal Time-Step 0.00785 ms
Relative Complexity 1007.93 HH
Model Size
Sections 67
Compartments 381
State Equations 3831
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00785 ms
Optimal Time-Step Error 0.16 %
Optimal Time-Step Benchmark Run Time 1007.93 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 1.53 %
Max. Stable Time-Step Benchmark Run Time 1976.89 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 12463 Hz
CVODE Steps Per AP 633
CVODE Benchmark Run Time 977.21 HH
Website & Images Copyright NeuroML © 2019 For questions: Contact us Links: Search Test |  ModelDB WS