Layer 2/3 Burst Accommodating Nest Basket Cell (2)

Model Type:
Cell
Neurolex IDs: Neocortex basket cell
Neocortex Layer 2
Neocortex Layer 3
Keywords: burst accommodating,Layer 2, Layer 3, Layer 2/3,Fast-spiking, interneuron, GABAergic, inhibitory, neocortex, rat, somatosensory cortex, nest, basket
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000113
bAC217_L23_NBC_55cf872277_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000113
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Accommodating Wide AP Multi-Spikers (awMS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -71.29 mV
Rheobase Current Interval (0.03708, 0.03845] nA
Threshold Current Interval (0.29297, 0.35156] nA
Bias Current (to -80.00 mV) -0.0184 nA
Testing Temperature 34.0 °C
Stability Interval [-1.5625, 15.0] nA
AP 1-2 Amplitude Drop 0.8270 mV
AP 1 Steady State Amplitude Change 1.6214 mV
AP 1 Amplitude 64.4003 mV
AP 1 Width at Half Height 0.7400 ms
AP 1 Width (Peak To Trough) 8.0200 ms
AP 1 Rate of Change Peak to Trough -10.6565 mV/ms
AP 1 AHP Depth 21.0652 mV
AP2 Amplitude 63.5733 mV
AP2 Width at Half Height 0.7500 ms
AP 2 Width (Peak to Trough) 8.3000 ms
AP 2 Rate of Change Peak to Trough -10.1965 mV/ms
AP 2 AHP Depth 21.0580 mV
AP 1-2 Amplitude Change Percent -1.2842 %
AP 1-2 Half Width Change Percent 1.3514 %
AP 1-2 Rate of Change Peak to Trough Percent Change -4.3167 %
AP 1-2 AHP Depth Percent Change -0.0344 %
Input Resistance 473.2453 MΩ
AP 1 Delay Mean 27.3100 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 93.5300 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 152.3750 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -66.6667 %
Steady State Accommodation Mean -66.6667 %
Accommodation Rate to Steady State N/A %/ms
Accommodation at Steady State Mean -77.4495 %
Accommodation Rate Mean at Steady State 10.0000 ms
ISI CV 3.1531
ISI Median 302.4300 ms
ISI Burst Mean Change 260.2084 %
Spike Rate (Strong Stimulation) 7.0000 Hz
AP 1 Delay Mean (Strong Stimulation) 10.2900 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 42.0000 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 35.4150 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2070.4000 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 3648.35 µm2
Number of Stems 9.0
Number of Bifurcations 26.0
Number of Branches 60.0
Overall Width 268.939 µm
Overall Height 297.191 µm
Overall Depth 154.4 µm
Average Diameter 0.828391 µm
Total Length 3449.7 µm
Total Surface 7384.6 µm2
Total Volume 2398.15 µm3
Max Euclidean Distance 220.48 µm
Max Path Distance 245.347 µm
Max Branch Order 7.0
Average Contraction 0.969337
Total Fragmentation 886.0
Partition Asymmetry 0.367333
Average Rall's Ratio 1.36786
Average Bifurcation Angle Local 44.4156 °
Average Bifurcation Angle Remote 49.3114 °
Fractal Dimension 1.00488
Complexity Summary
State Equations 1791
Optimal Time-Step 0.00767 ms
Relative Complexity 426.89 HH
Model Size
Sections 61
Compartments 177
State Equations 1791
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00767 ms
Optimal Time-Step Error 0.09 %
Optimal Time-Step Benchmark Run Time 426.89 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 0.58 %
Max. Stable Time-Step Benchmark Run Time 818.05 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 13697 Hz
CVODE Steps Per AP 620
CVODE Benchmark Run Time 428.34 HH
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