Layer 2/3 Burst Accommodating Martinotti Cell (2)

Model Type:
Cell
Neurolex IDs: Neocortex Layer 2
Neocortex Layer 3
Martinotti Cell
Keywords: burst accommodating,Layer 2, Layer 3, Layer 2/3,GABAergic, inhibitory, neocortex, rat, somatosensory cortex, Martinotti
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000108
bAC217_L23_MC_31f333a601_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000108
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Bursters (B)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -70.46 mV
Rheobase Current Interval (0.04486, 0.04578] nA
Threshold Current Interval (0.17578, 0.23438] nA
Bias Current (to -80.00 mV) -0.0249 nA
Testing Temperature 34.0 °C
Stability Interval [-1.25, 15.0] nA
AP 1-2 Amplitude Drop 0.9187 mV
AP 1 Steady State Amplitude Change 1.3789 mV
AP 1 Amplitude 80.2432 mV
AP 1 Width at Half Height 0.4200 ms
AP 1 Width (Peak To Trough) 1.9500 ms
AP 1 Rate of Change Peak to Trough -52.0056 mV/ms
AP 1 AHP Depth 21.1677 mV
AP2 Amplitude 79.3245 mV
AP2 Width at Half Height 0.4300 ms
AP 2 Width (Peak to Trough) 1.9600 ms
AP 2 Rate of Change Peak to Trough -51.2369 mV/ms
AP 2 AHP Depth 21.0997 mV
AP 1-2 Amplitude Change Percent -1.1449 %
AP 1-2 Half Width Change Percent 2.3810 %
AP 1-2 Rate of Change Peak to Trough Percent Change -1.4782 %
AP 1-2 AHP Depth Percent Change -0.3213 %
Input Resistance 372.1942 MΩ
AP 1 Delay Mean 21.0900 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 73.7400 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 58.1500 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -25.0000 %
Steady State Accommodation Mean -50.0000 %
Accommodation Rate to Steady State -0.1150 %/ms
Accommodation at Steady State Mean -79.9149 %
Accommodation Rate Mean at Steady State 205.7358 ms
ISI CV 3.1310
ISI Median 187.2300 ms
ISI Burst Mean Change 20.8927 %
Spike Rate (Strong Stimulation) 12.0000 Hz
AP 1 Delay Mean (Strong Stimulation) 5.6400 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 31.3900 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 26.9950 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2054.7500 ms
Frequency Filter Type Low-Pass
Frequency Filter Pass Below 76.9071 Hz
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 3775.86 µm2
Number of Stems 4.0
Number of Bifurcations 33.0
Number of Branches 69.0
Overall Width 207.754 µm
Overall Height 565.885 µm
Overall Depth 98.16 µm
Average Diameter 0.783193 µm
Total Length 3595.65 µm
Total Surface 8634.81 µm2
Total Volume 2586.73 µm3
Max Euclidean Distance 429.714 µm
Max Path Distance 476.41 µm
Max Branch Order 7.0
Average Contraction 0.945244
Total Fragmentation 2399.0
Partition Asymmetry 0.489081
Average Rall's Ratio 1.92421
Average Bifurcation Angle Local 28.4294 °
Average Bifurcation Angle Remote 53.9559 °
Fractal Dimension 1.01305
Complexity Summary
State Equations 1871
Optimal Time-Step 0.00782 ms
Relative Complexity 452.47 HH
Model Size
Sections 71
Compartments 185
State Equations 1871
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00782 ms
Optimal Time-Step Error 0.11 %
Optimal Time-Step Benchmark Run Time 452.47 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 1.11 %
Max. Stable Time-Step Benchmark Run Time 883.80 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 12957 Hz
CVODE Steps Per AP 622
CVODE Benchmark Run Time 445.90 HH
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