Layer 2/3 Burst Accommodating Double Bouquet Cell (1)

Model Type:
Cell
Neurolex IDs: Neocortex Layer 2
Neocortex Layer 3
Double Bouquet Cell
Keywords: burst accommodating,Layer 2, Layer 3, Layer 2/3,GABAergic, inhibitory, neocortex, rat, somatosensory cortex, double bouquet
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000097
bAC217_L23_DBC_393cc5cca5_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000097
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Bursters (B)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -72.90 mV
Rheobase Current Interval (0.03639, 0.03708] nA
Threshold Current Interval (0.11719, 0.17578] nA
Bias Current (to -80.00 mV) -0.0102 nA
Testing Temperature 34.0 °C
Stability Interval [-0.9375, 15.0] nA
AP 1-2 Amplitude Drop 1.4251 mV
AP 1 Steady State Amplitude Change 2.1122 mV
AP 1 Amplitude 84.7949 mV
AP 1 Width at Half Height 0.4000 ms
AP 1 Width (Peak To Trough) 2.2500 ms
AP 1 Rate of Change Peak to Trough -47.3614 mV/ms
AP 1 AHP Depth 21.7683 mV
AP2 Amplitude 83.3699 mV
AP2 Width at Half Height 0.4000 ms
AP 2 Width (Peak to Trough) 2.2700 ms
AP 2 Rate of Change Peak to Trough -46.3536 mV/ms
AP 2 AHP Depth 21.8529 mV
AP 1-2 Amplitude Change Percent -1.6806 %
AP 1-2 Half Width Change Percent 0.0000 %
AP 1-2 Rate of Change Peak to Trough Percent Change -2.1279 %
AP 1-2 AHP Depth Percent Change 0.3884 %
Input Resistance 655.7889 MΩ
AP 1 Delay Mean 14.3900 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 57.3800 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 48.6050 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -50.0000 %
Steady State Accommodation Mean -25.0000 %
Accommodation Rate to Steady State -0.0525 %/ms
Accommodation at Steady State Mean -84.6788 %
Accommodation Rate Mean at Steady State 141.7298 ms
ISI CV 3.1664
ISI Median 186.2900 ms
ISI Burst Mean Change 26.1224 %
Spike Rate (Strong Stimulation) 11.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 4.6500 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 28.1600 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 24.7400 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2045.6900 ms
Frequency Filter Type Low-Pass
Frequency Filter Pass Below 79.8102 Hz
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 3531.73 µm2
Number of Stems 6.0
Number of Bifurcations 29.0
Number of Branches 63.0
Overall Width 179.244 µm
Overall Height 322.965 µm
Overall Depth 86.24 µm
Average Diameter 0.645303 µm
Total Length 2591.93 µm
Total Surface 3713.09 µm2
Total Volume 1329.23 µm3
Max Euclidean Distance 308.229 µm
Max Path Distance 318.538 µm
Max Branch Order 6.0
Average Contraction 0.977205
Total Fragmentation 1090.0
Partition Asymmetry 0.462069
Average Rall's Ratio 0.71625
Average Bifurcation Angle Local 55.4181 °
Average Bifurcation Angle Remote 69.8555 °
Fractal Dimension 1.00373
Complexity Summary
State Equations 1401
Optimal Time-Step 0.00774 ms
Relative Complexity 339.66 HH
Model Size
Sections 64
Compartments 138
State Equations 1401
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00774 ms
Optimal Time-Step Error 0.17 %
Optimal Time-Step Benchmark Run Time 339.66 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 1.20 %
Max. Stable Time-Step Benchmark Run Time 657.28 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 12627 Hz
CVODE Steps Per AP 746
CVODE Benchmark Run Time 347.33 HH
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