Layer 2/3 Burst Accommodating Bitufted Cell (1)

Model Type:
Cell
Neurolex IDs: Neocortex Layer 2
Neocortex Layer 3
Keywords: burst accommodating,Layer 2, Layer 3, Layer 2/3,Rat, somatosensory cortex, bitufted
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000092
bAC217_L23_BTC_65225ca4f8_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000092
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Bursters (B)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -72.73 mV
Rheobase Current Interval (0.06454, 0.06592] nA
Threshold Current Interval (0.29297, 0.35156] nA
Bias Current (to -80.00 mV) -0.0185 nA
Testing Temperature 34.0 °C
Stability Interval [-2.1875, 15.0] nA
AP 1-2 Amplitude Drop 2.2845 mV
AP 1 Steady State Amplitude Change 3.1482 mV
AP 1 Amplitude 75.3183 mV
AP 1 Width at Half Height 0.5000 ms
AP 1 Width (Peak To Trough) 4.6900 ms
AP 1 Rate of Change Peak to Trough -20.7733 mV/ms
AP 1 AHP Depth 22.1082 mV
AP2 Amplitude 73.0338 mV
AP2 Width at Half Height 0.5100 ms
AP 2 Width (Peak to Trough) 4.9600 ms
AP 2 Rate of Change Peak to Trough -19.2474 mV/ms
AP 2 AHP Depth 22.4335 mV
AP 1-2 Amplitude Change Percent -3.0331 %
AP 1-2 Half Width Change Percent 2.0000 %
AP 1-2 Rate of Change Peak to Trough Percent Change -7.3451 %
AP 1-2 AHP Depth Percent Change 1.4712 %
Input Resistance 364.0145 MΩ
AP 1 Delay Mean 15.7600 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 60.6100 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 60.9700 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -50.0000 %
Steady State Accommodation Mean -50.0000 %
Accommodation Rate to Steady State -0.1296 %/ms
Accommodation at Steady State Mean -86.4295 %
Accommodation Rate Mean at Steady State 140.3982 ms
ISI CV 2.9053
ISI Median 215.3850 ms
ISI Burst Mean Change 71.8841 %
Spike Rate (Strong Stimulation) 10.0000 Hz
AP 1 Delay Mean (Strong Stimulation) 5.9500 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 30.2200 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 25.8450 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2048.8600 ms
Frequency Filter Type Low-Pass
Frequency Filter Pass Below 54.0766 Hz
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 7191.39 µm2
Number of Stems 7.0
Number of Bifurcations 18.0
Number of Branches 42.0
Overall Width 233.272 µm
Overall Height 387.048 µm
Overall Depth 196.71 µm
Average Diameter 1.01963 µm
Total Length 2983.07 µm
Total Surface 7112.96 µm2
Total Volume 3480.55 µm3
Max Euclidean Distance 259.347 µm
Max Path Distance 280.864 µm
Max Branch Order 5.0
Average Contraction 0.972539
Total Fragmentation 660.0
Partition Asymmetry 0.477778
Average Rall's Ratio 1.40875
Average Bifurcation Angle Local 27.8361 °
Average Bifurcation Angle Remote 36.3052 °
Fractal Dimension 1.0043
Complexity Summary
State Equations 1481
Optimal Time-Step 0.00768 ms
Relative Complexity 364.87 HH
Model Size
Sections 44
Compartments 146
State Equations 1481
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00768 ms
Optimal Time-Step Error 0.09 %
Optimal Time-Step Benchmark Run Time 364.87 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 0.98 %
Max. Stable Time-Step Benchmark Run Time 700.57 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 12448 Hz
CVODE Steps Per AP 760
CVODE Benchmark Run Time 369.45 HH
Website & Images Copyright NeuroML © 2021 For questions: Contact us Links: Search Test |  ModelDB WS